5TCQ Membrane Protein date Sep 15, 2016
title Near-Atomic Resolution Cryo-Em Structure Of The Salmonella S III Secretion Injectisome Secretin Invg
authors L.J.Worrall, C.Hong, M.Vuckovic, J.R.C.Bergeron, R.K.Huang, Z.Yu, N.C.J.Strynadka
compound source
Molecule: Protein Invg
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
 Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceNear-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body., Worrall LJ, Hong C, Vuckovic M, Deng W, Bergeron JR, Majewski DD, Huang RK, Spreter T, Finlay BB, Yu Z, Strynadka NC, Nature. 2016 Dec 14. doi: 10.1038/nature20576. PMID:27974800
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (683 Kb) [Save to disk]
  • Biological Unit Coordinates (5tcq.pdb1.gz) 668 Kb
  • CSU: Contacts of Structural Units for 5TCQ
  • Retrieve 5TCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TCQ from S2C, [Save to disk]
    • View 5TCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TCQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tcq_I] [5tcq_J] [5tcq_H] [5tcq_E] [5tcq_B] [5tcq] [5tcq_A] [5tcq_O] [5tcq_D] [5tcq_F] [5tcq_L] [5tcq_N] [5tcq_C] [5tcq_K] [5tcq_M] [5tcq_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TCQ
  • Community annotation for 5TCQ at PDBWiki (http://pdbwiki.org)

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