5TE8 Oxidoreductase date Sep 20, 2016
title Crystal Structure Of The Midazolam-Bound Human Cyp3a4
authors I.Sevrioukova, T.Poulos
compound source
Molecule: Cytochrome P450 3a4
Chain: A, B, C
Synonym: 1,8-Cineole 2-Exo-Monooxygenase,Albendazole Monoox Albendazole Sulfoxidase,Cypiiia3,Cypiiia4,Cholesterol 25-Hy Cytochrome P450 3a3,Cytochrome P450 Hlp,Cytochrome P450 Nf- Cytochrome P450-Pcn1,Nifedipine Oxidase,Quinine 3-Monooxyge Taurochenodeoxycholate 6-Alpha-Hydroxylase;
Ec: 1.14.13.-
Engineered: Yes
Other_details: Human Cyp3a4 With Residues 3-22 Deleted And Addition C-Terminal 4-Histidine Tag
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp3a4, Cyp3a3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pcwori
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.289 117.980 205.649 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 08J, HEM enzyme Oxidoreductase E.C.1.14.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • vitamin D3 25-hydroxylase ac...


  • Primary referenceStructural basis for regiospecific midazolam oxidation by human cytochrome P450 3A4., Sevrioukova IF, Poulos TL, Proc Natl Acad Sci U S A. 2016 Dec 28. pii: 201616198. doi:, 10.1073/pnas.1616198114. PMID:28031486
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (490 Kb) [Save to disk]
  • Biological Unit Coordinates (5te8.pdb1.gz) 482 Kb
  • LPC: Ligand-Protein Contacts for 5TE8
  • CSU: Contacts of Structural Units for 5TE8
  • Structure Factors (925 Kb)
  • Retrieve 5TE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TE8 from S2C, [Save to disk]
  • Re-refined 5te8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TE8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5te8_B] [5te8_C] [5te8_A] [5te8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TE8
  • Community annotation for 5TE8 at PDBWiki (http://pdbwiki.org)

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