5TJG Transferase Dna date Oct 04, 2016
title Thermus Aquaticus Delta1.1-Sigmaa Holoenzymedownstream-Fork Complex With An Open Clamp
authors S.A.Darst, B.Bae
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
 Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Atcc: 25104

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Atcc: 25104

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Atcc: 25104

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Atcc: 25104

Molecule: Rna Polymerase Sigma Factor Siga
Chain: F
Engineered: Yes
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Atcc: 25104
Gene: Siga
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Tpaptpapaptpgpgpgpa)-3')
Chain: G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor 0.224 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.098 111.423 143.177 104.12 99.66 109.43
method X-Ray Diffractionresolution 2.60 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F


Primary referenceRNA polymerase motions during promoter melting., Feklistov A, Bae B, Hauver J, Lass-Napiorkowska A, Kalesse M, Glaus F, Altmann KH, Heyduk T, Landick R, Darst SA, Science. 2017 May 26;356(6340):863-866. doi: 10.1126/science.aam7858. PMID:28546214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]
  • Biological Unit Coordinates (5tjg.pdb1.gz) 557 Kb
  • LPC: Ligand-Protein Contacts for 5TJG
  • CSU: Contacts of Structural Units for 5TJG
  • Structure Factors (2840 Kb)
  • Retrieve 5TJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TJG from S2C, [Save to disk]
  • Re-refined 5tjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TJG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tjg_F] [5tjg_G] [5tjg_C] [5tjg_E] [5tjg_B] [5tjg_D] [5tjg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TJG
  • Community annotation for 5TJG at PDBWiki (http://pdbwiki.org)

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