5TKG Oxidoreductase date Oct 06, 2016
title Neurospora Crassa Polysaccharide Monooxygenase 2 Resting Sta
authors W.B.O'Dell, F.Meilleur
compound source
Molecule: Lytic Polysaccharide Monooxygenase
Chain: A, B
Synonym: Related To Cel1 Protein
Engineered: Yes
 Organism_scientific: Neurospora Crassa
Organism_taxid: 5141
Gene: G15g9.090, Ge21draft_7469
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Superman5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
symmetry Space Group: P 1 21 1
R_factor 0.113 R_Free 0.140
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.350 42.210 69.480 90.00 98.96 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CU, MAN, NAG, OXY enzyme
Gene GE21DRAFT
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • monooxygenase activity


    • Primary referenceOxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase., O'Dell WB, Agarwal PK, Meilleur F, Angew Chem Int Ed Engl. 2017 Jan 16;56(3):767-770. doi: 10.1002/anie.201610502., Epub 2016 Dec 22. PMID:28004877
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (5tkg.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (5tkg.pdb2.gz) 130 Kb
  • Biological Unit Coordinates (5tkg.pdb3.gz) 254 Kb
  • LPC: Ligand-Protein Contacts for 5TKG
  • CSU: Contacts of Structural Units for 5TKG
  • Structure Factors (2388 Kb)
  • Retrieve 5TKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TKG from S2C, [Save to disk]
  • Re-refined 5tkg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TKG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tkg_B] [5tkg] [5tkg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TKG
  • Community annotation for 5TKG at PDBWiki (http://pdbwiki.org)

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