5TLM Transcription date Oct 11, 2016
title Crystal Structure Of The Er-Alpha Ligand-Binding Domain (Y53 Complex With 4,4',4''-(Thiophene-2,3,5-Triyl)Triphenol
authors J.C.Nwachukwu, S.Srinivasan, N.E.Bruno, J.Nowak, D.J.Kojetin, O.E J.A.Katzenellenbogen, K.W.Nettles
compound source
Molecule: Estrogen Receptor
Chain: A, B
Fragment: Ligand-Binding Domain
Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Nuclear Receptor Coactivator 2
Chain: C, D
Fragment: Nuclear Receptor-Interacting Peptide
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.030 80.810 58.090 90.00 111.28 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 7EM enzyme
Primary referenceSystems Structural Biology Analysis of Ligand Effects on ERalpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies., Nwachukwu JC, Srinivasan S, Bruno NE, Nowak J, Wright NJ, Minutolo F, Rangarajan ES, Izard T, Yao XQ, Grant BJ, Kojetin DJ, Elemento O, Katzenellenbogen JA, Nettles KW, Cell Chem Biol. 2016 Dec 21. pii: S2451-9456(16)30437-8. doi:, 10.1016/j.chembiol.2016.11.014. PMID:28042045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5tlm.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 5TLM
  • CSU: Contacts of Structural Units for 5TLM
  • Structure Factors (197 Kb)
  • Retrieve 5TLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TLM from S2C, [Save to disk]
  • Re-refined 5tlm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tlm_D] [5tlm_C] [5tlm_A] [5tlm_B] [5tlm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TLM
  • Community annotation for 5TLM at PDBWiki (http://pdbwiki.org)

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