5TO4 Hydrolase date Oct 16, 2016
title Phospholipase C Gamma-1 C-Terminal Sh2 Domain, Spacegroup P2
authors D.S.Wuttke, M.A.Mckercher
compound source
Molecule: 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodi Gamma-1;
Chain: A
Fragment: Unp Residues 663-759
Synonym: Plc-148,Phosphoinositide Phospholipase C-Gamma-1, Phospholipase C-II,Plc-II,Phospholipase C-Gamma-1,Plc-Gamma
Ec: 3.1.4.11
Engineered: Yes
Other_details: Scattered Electron Density Was Also Present Least Two Additional Polymers, Likely Low Molecular Weight Polyethylene Glycol Molecules. However, The Molecules Could Fit Into The Density Non-Ambiguously And Were Consequently From The Model.
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Plcg1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.030 36.440 88.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Hydrolase E.C.3.1.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultimodal Recognition of Diverse Peptides by the C-Terminal SH2 Domain of Phospholipase C-gamma1 Protein., McKercher MA, Guan X, Tan Z, Wuttke DS, Biochemistry. 2017 Apr 11. doi: 10.1021/acs.biochem.7b00023. PMID:28376302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5to4.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5TO4
  • Structure Factors (154 Kb)
  • Retrieve 5TO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TO4 from S2C, [Save to disk]
  • Re-refined 5to4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TO4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5to4_A] [5to4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TO4
  • Community annotation for 5TO4 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science