5U1V Membrane Protein date Nov 29, 2016
title Crystal Structure Of The Atp-Gated P2x7 Ion Channel Bound To Allosteric Antagonist A804598
authors A.Karasawa, T.Kawate
compound source
Molecule: P2x Purinoceptor
Chain: A
Engineered: Yes
Other_details: Both The N- And C-Termini Are Disordered And Electron Density Was Not Well-Defined.
 Organism_scientific: Ailuropoda Melanoleuca
Organism_common: Giant Panda
Organism_taxid: 9646
Gene: P2rx7
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 21 3
R_factor 0.250 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.403 170.403 170.403 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand 7S1, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for subtype-specific inhibition of the P2X7 receptor., Karasawa A, Kawate T, Elife. 2016 Dec 9;5. pii: e22153. doi: 10.7554/eLife.22153. PMID:27935479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5u1v.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 5U1V
  • CSU: Contacts of Structural Units for 5U1V
  • Structure Factors (501 Kb)
  • Retrieve 5U1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U1V from S2C, [Save to disk]
  • Re-refined 5u1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5U1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U1V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u1v] [5u1v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U1V
  • Community annotation for 5U1V at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science