5U39 Hydrolase date Dec 01, 2016
title Pseudomonas Aeruginosa Lpxc In Complex With Chir-090
authors E.R.Sprague
compound source
Molecule: Udp-3-O-Acyl-N-Acetylglucosamine Deacetylase
Chain: A
Synonym: Udp-3-O-Acyl-Glcnac Deacetylase,Udp-3-O-[R-3- Hydroxymyristoyl]-N-Acetylglucosamine Deacetylase;
Ec: 3.5.1.108
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1;
Gene: Lpxc, Enva, Pa4406
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.230 82.880 87.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand C90, ZN enzyme Hydrolase E.C.3.5.1.108 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5u39.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5U39
  • CSU: Contacts of Structural Units for 5U39
  • Structure Factors (446 Kb)
  • Retrieve 5U39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U39 from S2C, [Save to disk]
  • Re-refined 5u39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5U39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U39
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U39
  • Community annotation for 5U39 at PDBWiki (http://pdbwiki.org)

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