5U9D Antitumor Protein date Dec 16, 2016
title Discovery Of A Potent Btk Inhibitor With A Novel Binding Mod Parallel Selections With A Dna-Encoded Chemical Library
authors J.W.Cuozzo, P.A.Centrella, D.Gikunju, S.Habeshian, C.D.Hupp, A.D. E.Sigel, H.H.Soutter, H.A.Thomson, Y.Zhang, M.A.Clark
compound source
Molecule: Tyrosine-Protein Kinase Btk
Chain: A
Fragment: Kinase Domain, Unp Residues 423-693
Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btk, Agmx1, Atk, Bpk
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 2
R_factor 0.148 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.553 103.483 37.839 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.33 Å
ligand 83P, EDO, PEG enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a potent BTK inhibitor with a novel binding mode using parallel selections with a DNA-encoded chemical library., Cuozzo JW, Centrella PA, Gikunju D, Habeshian S, Hupp CD, Keefe AD, Sigel EA, Soutter HH, Thomson HA, Zhang Y, Clark MA, Chembiochem. 2017 Jan 5. doi: 10.1002/cbic.201600573. PMID:28056160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (5u9d.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 5U9D
  • CSU: Contacts of Structural Units for 5U9D
  • Structure Factors (1288 Kb)
  • Retrieve 5U9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U9D from S2C, [Save to disk]
  • Re-refined 5u9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5U9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U9D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u9d] [5u9d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U9D
  • Community annotation for 5U9D at PDBWiki (http://pdbwiki.org)

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