5UHI Transcription date Jan 11, 2017
title Structure Of Rorgt Bound To
authors J.Spurlino, M.Abad
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, B
Fragment: Unp Residues 265-507
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.257 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.350 104.323 123.577 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand 8A4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification and structure activity relationships of quinoline tertiary alcohol modulators of RORgammat., Kummer DA, Cummings MD, Abad M, Barbay J, Castro G, Wolin R, Kreutter KD, Maharoof U, Milligan C, Nishimura R, Pierce J, Schalk-Hihi C, Spurlino J, Urbanski M, Venkatesan H, Wang A, Woods C, Xue X, Edwards JP, Fourie AM, Leonard K, Bioorg Med Chem Lett. 2017 Feb 21. pii: S0960-894X(17)30163-4. doi:, 10.1016/j.bmcl.2017.02.044. PMID:28318945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhi.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (5uhi.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5UHI
  • CSU: Contacts of Structural Units for 5UHI
  • Structure Factors (74 Kb)
  • Retrieve 5UHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHI from S2C, [Save to disk]
  • Re-refined 5uhi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UHI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhi] [5uhi_A] [5uhi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UHI
  • Community annotation for 5UHI at PDBWiki (http://pdbwiki.org)

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