5ULF	Transferase Signaling Protein	date	Jan 24, 2017
title	Crystal Structure Of A Ubch5b~Ub Conjugate
authors	A.J.Middleton, C.L.Day, J.D.Wright
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 D2 Chain: A, C Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme D Ubiquitin-Conjugating Enzyme D2,Ubiquitin Carrier Protein D Ubiquitin-Conjugating Enzyme E2(17)Kb 2,Ubiquitin-Conjugati E2-17 Kda 2,Ubiquitin-Protein Ligase D2,P53-Regulated Ubiqu Conjugating Enzyme 1; Ec: 2.3.2.23,2.3.2.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d2, Pubc1, Ubc4, Ubc5b, Ubch4, Ubch5b Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_cell_line: Bl21
Molecule: Ubiquitin Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_cell_line: Bl21
symmetry	Space Group: P 1	R_factor 0.227 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.336 61.356 62.824 102.84 91.66 90.02
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL	enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (5ulf.pdb1.gz) 80 Kb Biological Unit Coordinates (5ulf.pdb2.gz) 81 Kb LPC: Ligand-Protein Contacts for 5ULF CSU: Contacts of Structural Units for 5ULF Structure Factors (1675 Kb) Retrieve 5ULF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ULF from S2C, [Save to disk] Re-refined 5ulf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ULF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ULF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ulf_B] [5ulf_C] [5ulf_A] [5ulf_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5ULF

Community annotation for 5ULF at PDBWiki (http://pdbwiki.org)

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