5ULK	Transferase	date	Jan 24, 2017
title	Crystal Structure Of Rnf165 In Complex With A Ubch5b~Ub Conj
authors	A.J.Middleton, C.L.Day, J.D.Wright
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 D2 Chain: A Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme D Ubiquitin-Conjugating Enzyme D2,Ubiquitin Carrier Protein D Ubiquitin-Conjugating Enzyme E2(17)Kb 2,Ubiquitin-Conjugati E2-17 Kda 2,Ubiquitin-Protein Ligase D2,P53-Regulated Ubiqu Conjugating Enzyme 1; Ec: 2.3.2.23,2.3.2.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d2, Pubc1, Ubc4, Ubc5b, Ubch4, Ubch5b Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_cell_line: Bl21
Molecule: Ubiquitin Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_cell_line: Bl21
Molecule: E3 Ubiquitin-Protein Ligase Rnf165 Chain: C Fragment: Residues 292-340 Synonym: Ring Finger Protein 165 Ec: 2.3.2.27 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnf165 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_cell_line: Bl21
symmetry	Space Group: C 2 2 21	R_factor 0.207 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.109 73.714 121.559 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.38 Å
ligand	ZN	enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (5ulk.pdb1.gz) 90 Kb LPC: Ligand-Protein Contacts for 5ULK CSU: Contacts of Structural Units for 5ULK Structure Factors (577 Kb) Retrieve 5ULK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ULK from S2C, [Save to disk] Re-refined 5ulk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ULK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ULK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ulk_B] [5ulk_C] [5ulk_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5ULK

Community annotation for 5ULK at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---