5ULM Transferase date Jan 24, 2017
title Structure Of The Ask1 Central Regulatory Region
authors P.D.Mace, A.Kumar, T.T.Caradoc-Davies
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 5
Chain: A, B
Fragment: Unp Residues 269-658
Synonym: Apoptosis Signal-Regulating Kinase 1,Ask-1,Mapker Kinase 5,Mekk 5;
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k5, Ask1, Mapkkk5, Mekk5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28 Based
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.234 57.117 103.575 90.00 104.87 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of autoregulatory scaffolding by apoptosis signal-regulating kinase 1., Weijman JF, Kumar A, Jamieson SA, King CM, Caradoc-Davies TT, Ledgerwood EC, Murphy JM, Mace PD, Proc Natl Acad Sci U S A. 2017 Feb 27. pii: 201620813. doi:, 10.1073/pnas.1620813114. PMID:28242696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (5ulm.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (5ulm.pdb2.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 5ULM
  • CSU: Contacts of Structural Units for 5ULM
  • Structure Factors (1403 Kb)
  • Retrieve 5ULM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ULM from S2C, [Save to disk]
  • Re-refined 5ulm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ULM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ULM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ulm_B] [5ulm] [5ulm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ULM
  • Community annotation for 5ULM at PDBWiki (http://pdbwiki.org)

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