5UPE	Transferase Transferase Inhibitor	date	Feb 02, 2017
title	Crystal Structure Of Human Nampt With Isoindoline Urea Inhib Compound 5
authors	K.L.Longenecker, D.Raich, A.V.Korepanova
compound		source
Molecule: Nicotinamide Phosphoribosyltransferase Chain: A, B Synonym: Nampt,Pre-B-Cell Colony-Enhancing Factor 1,Pre-B C Enhancing Factor,Visfatin; Ec: 2.4.2.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nampt, Pbef, Pbef1 Expression_system: Mammalia Expression_system_taxid: 40674 Expression_system_cell_line: Hek 293-6e
symmetry	Space Group: P 1 21 1	R_factor 0.187 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.073 106.448 83.109 90.00 96.63 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	8HY	enzyme	Transferase E.C.2.4.2.12 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	SAR and characterization of non-substrate isoindoline urea inhibitors of nicotinamide phosphoribosyltransferase (NAMPT)., Curtin ML, Heyman HR, Clark RF, Sorensen BK, Doherty GA, Hansen TM, Frey RR, Sarris KA, Aguirre AL, Shrestha A, Tu N, Woller K, Pliushchev MA, Sweis RF, Cheng M, Wilsbacher JL, Kovar PJ, Guo J, Cheng D, Longenecker KL, Raich D, Korepanova AV, Soni NB, Algire MA, Richardson PL, Marin VL, Badagnani I, Vasudevan A, Buchanan FG, Maag D, Chiang GG, Tse C, Michaelides MR, Bioorg Med Chem Lett. 2017 Aug 1;27(15):3317-3325. doi:, 10.1016/j.bmcl.2017.06.018. Epub 2017 Jun 14. PMID:28610984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (5upe.pdb1.gz) 160 Kb LPC: Ligand-Protein Contacts for 5UPE CSU: Contacts of Structural Units for 5UPE Structure Factors (3358 Kb) Retrieve 5UPE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UPE from S2C, [Save to disk] Re-refined 5upe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UPE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UPE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5upe_A] [5upe_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5UPE

Community annotation for 5UPE at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---