5US1 Transferase date Feb 13, 2017
title Crystal Structure Of Aminoglycoside Acetyltransferase Aac(2' Complex With N2'-Acetylgentamicin C1a And Coenzyme A
authors P.J.Stogios, E.Evdokimova, Z.Xu, Z.Wawrzak, A.Savchenko, W.F.Ande Center For Structural Genomics Of Infectious Diseases (Csgi
compound source
Molecule: Aminoglycoside 2'-N-Acetyltransferase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Aac(2')-Ia
Ec: 2.3.1.59
Engineered: Yes
Organism_scientific: Providencia Stuartii
Organism_taxid: 588
Gene: Aac
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: H 3
R_factor 0.187 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
340.170 340.170 62.770 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.48 Å
ligand 8MM, ACO, COA, GOL, TAR enzyme Transferase E.C.2.3.1.59 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referencePlazomicin Retains Antibiotic Activity against Most Aminoglycoside Modifying Enzymes., Cox G, Ejim L, Stogios PJ, Koteva K, Bordeleau E, Evdokimova E, Sieron AO, Savchenko A, Serio AW, Krause KM, Wright GD, ACS Infect Dis. 2018 Apr 19. doi: 10.1021/acsinfecdis.8b00001. PMID:29634241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (761 Kb) [Save to disk]
  • Biological Unit Coordinates (5us1.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (5us1.pdb2.gz) 130 Kb
  • Biological Unit Coordinates (5us1.pdb3.gz) 131 Kb
  • Biological Unit Coordinates (5us1.pdb4.gz) 127 Kb
  • Biological Unit Coordinates (5us1.pdb5.gz) 128 Kb
  • Biological Unit Coordinates (5us1.pdb6.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 5US1
  • CSU: Contacts of Structural Units for 5US1
  • Structure Factors (1624 Kb)
  • Retrieve 5US1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5US1 from S2C, [Save to disk]
  • Re-refined 5us1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5US1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5US1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5us1_G] [5us1_K] [5us1_I] [5us1_F] [5us1_J] [5us1_D] [5us1_L] [5us1_C] [5us1_E] [5us1_H] [5us1_A] [5us1_B] [5us1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5US1
  • Community annotation for 5US1 at PDBWiki (http://pdbwiki.org)

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