5UYU Hydrolase date Feb 24, 2017
title Crystal Structure Of Bace1 In Complex With 2-Aminooxazoline- Azaxanthene Compound 12
authors D.A.Whittington, A.M.Long, E.A.Sickmier
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 43-453
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.205 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.287 102.287 170.374 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 8QV, GOL, IOD enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of 2-aminooxazoline 3-azaxanthene beta-amyloid cleaving enzyme (BACE) inhibitors with improved selectivity against Cathepsin D., Low JD, Bartberger MD, Chen K, Cheng Y, Fielden MR, Gore V, Hickman D, Liu Q, Allen Sickmier E, Vargas HM, Werner J, White RD, Whittington DA, Wood S, Minatti AE, Medchemcomm. 2017 Apr 27;8(6):1196-1206. doi: 10.1039/c7md00106a. eCollection, 2017 Jun 1. PMID:30108829
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (5uyu.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 5UYU
  • CSU: Contacts of Structural Units for 5UYU
  • Structure Factors (402 Kb)
  • Retrieve 5UYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UYU from S2C, [Save to disk]
  • Re-refined 5uyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uyu] [5uyu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UYU
  • Community annotation for 5UYU at PDBWiki (http://pdbwiki.org)

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