5V45 Chaperone date Mar 08, 2017
title Crystal Structure Of The F270m, K291m, L318m Mutant Of Sr1 D Human Sacsin
authors M.Menade, G.Kozlov, K.Gehring
compound source
Molecule: Sacsin
Chain: A, B
Fragment: Unp Residues 89-336
Synonym: Dnaj Homolog Subfamily C Member 29,Dnajc29
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sacs, Kiaa0730
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 1
R_factor 0.186 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.679 41.360 74.106 99.55 95.26 107.50
method X-Ray Diffractionresolution 1.91 Å
ligand MSE enzyme
Primary referenceStructures of Ubl and Hsp90-like domains of sacsin provide insight into pathological mutations., Menade M, Kozlov G, Trempe JF, Pande H, Shenker S, Wickremasinghe S, Li X, Hojjat H, Dicaire MJ, Brais B, McPherson PS, Wong MJH, Young JC, Gehring K, J Biol Chem. 2018 Jun 26. pii: RA118.003939. doi: 10.1074/jbc.RA118.003939. PMID:29945973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5v45.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (5v45.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5V45
  • CSU: Contacts of Structural Units for 5V45
  • Structure Factors (917 Kb)
  • Retrieve 5V45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V45 from S2C, [Save to disk]
  • Re-refined 5v45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V45
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v45_B] [5v45_A] [5v45]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V45
  • Community annotation for 5V45 at PDBWiki (http://pdbwiki.org)

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