5V4G Hydrolase date Mar 09, 2017
title Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct With Two Bi Sites
authors M.P.Sullivan, C.G.Hartinger, D.C.Goldstone
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.177 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.282 80.282 36.928 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand NA, RU7 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe metalation of hen egg white lysozyme impacts protein stability as shown by ion mobility mass spectrometry, differential scanning calorimetry, and X-ray crystallography., Sullivan MP, Groessl M, Meier SM, Kingston RL, Goldstone DC, Hartinger CG, Chem Commun (Camb). 2017 Apr 11;53(30):4246-4249. doi: 10.1039/c6cc10150j. PMID:28361137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5v4g.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5V4G
  • CSU: Contacts of Structural Units for 5V4G
  • Structure Factors (998 Kb)
  • Retrieve 5V4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V4G from S2C, [Save to disk]
  • Re-refined 5v4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5V4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V4G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v4g] [5v4g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V4G
  • Community annotation for 5V4G at PDBWiki (http://pdbwiki.org)

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