5V4S Transport Protein date Mar 10, 2017
title Cryoem Structure Of A Prokaryotic Cyclic Nucleotide-Gated Io
authors Z.M.James, A.J.Borst, Y.Haitin, B.Frenz, F.Dimaio, W.N.Zagotta, D.
compound source
Molecule: Transporter, Cation Channel Family Cyclic Nucle Binding Domain Multi-Domain Protein;
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Leptospira Licerasiae Serovar Varillal 010;
Organism_taxid: 1049972
Gene: Lep1gsc185_1946
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
Gene LEP1GSC185
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ion channel activity
  • voltage-gated potassium chan...


    • Primary referenceCryoEM structure of a prokaryotic cyclic nucleotide-gated ion channel., James ZM, Borst AJ, Haitin Y, Frenz B, DiMaio F, Zagotta WN, Veesler D, Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4430-4435. doi:, 10.1073/pnas.1700248114. Epub 2017 Apr 10. PMID:28396445
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (5v4s.pdb1.gz) 204 Kb
  • CSU: Contacts of Structural Units for 5V4S
  • Retrieve 5V4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V4S from S2C, [Save to disk]
    • View 5V4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V4S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v4s_A] [5v4s] [5v4s_B] [5v4s_D] [5v4s_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V4S
  • Community annotation for 5V4S at PDBWiki (http://pdbwiki.org)

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