5V56 Membrane Protein date Mar 13, 2017
title 2.9a Xfel Structure Of The Multi-Domain Human Smoothened Rec (With E194m Mutation) In Complex With Tc114
authors X.Zhang, F.Zhao, Y.Wu, J.Yang, G.W.Han, S.Zhao, A.Ishchenko, L.Ye, X K.Ding, V.Dharmarajan, P.R.Griffin, C.Gati, G.Nelson, M.S.Hunter M.A.Hanson, V.Cherezov, R.C.Stevens, W.Tan, H.Tao, F.Xu
compound source
Molecule: Smoothened Homolog,Flavodoxin,Smoothened Homolog
Chain: A, B
Fragment: Unp Residues 53-433,444-558
Synonym: Smo,Protein Gx
Engineered: Yes
Mutation: Yes
Other_details: The Fusion Protein Of Smoothened Homolog (Re 433), Flavodoxin (Residues 1002-1148), Smoothened Homolog ( 444-558) And 10 His Tags
 Organism_scientific: Homo Sapiens, Desulfovibrio Vulgaris
Organism_common: Human
Organism_taxid: 9606, 882
Strain: Hildenborough Atcc 29579 Dsm 644 Ncimb 8303
Gene: Smo, Smoh, Dvu_2680
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.218 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.590 349.540 61.760 90.00 101.10 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 836, FMN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (5v56.pdb1.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 5V56
  • CSU: Contacts of Structural Units for 5V56
  • Structure Factors (1265 Kb)
  • Retrieve 5V56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V56 from S2C, [Save to disk]
  • Re-refined 5v56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 5V56
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v56_B] [5v56] [5v56_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V56
  • Community annotation for 5V56 at PDBWiki (http://pdbwiki.org)

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