5VB8 Transport Protein date Mar 28, 2017
title Crystal Structure Of The Navab Voltage-Gated Sodium Channel State
authors M.J.Lenaeus, W.A.Catterall
compound source
Molecule: Ion Transport Protein
Chain: A
Fragment: Unp Residues 1-226
Engineered: Yes
 Organism_scientific: Arcobacter Butzleri
Organism_taxid: 28197
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
symmetry Space Group: I 4 2 2
R_factor 0.228 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.302 125.302 192.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand NA, PX4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of closed and open states of a voltage-gated sodium channel., Lenaeus MJ, Gamal El-Din TM, Ing C, Ramanadane K, Pomes R, Zheng N, Catterall WA, Proc Natl Acad Sci U S A. 2017 Mar 27. pii: 201700761. doi:, 10.1073/pnas.1700761114. PMID:28348242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (5vb8.pdb1.gz) 423 Kb
  • LPC: Ligand-Protein Contacts for 5VB8
  • CSU: Contacts of Structural Units for 5VB8
  • Structure Factors (438 Kb)
  • Retrieve 5VB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VB8 from S2C, [Save to disk]
  • Re-refined 5vb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5VB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VB8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vb8_A] [5vb8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VB8
  • Community annotation for 5VB8 at PDBWiki (http://pdbwiki.org)

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