5VKQ Membrane Protein date Apr 22, 2017
title Structure Of A Mechanotransduction Ion Channel Drosophila No Nanodisc
authors P.Jin, D.Bulkley, Y.Guo, W.Zhang, Z.Guo, W.Huynh, S.Wu, S.Meltzer, T L.Y.Jan, Y.N.Jan, Y.Cheng
compound source
Molecule: No Mechanoreceptor Potential C Isoform L
Chain: A, B, C, D
Synonym: No Mechanoreceptor Potential C,Isoform E
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Nompc, Cg11020, Dmel_cg11020
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Bacmam
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.55 Å
ligand PCF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceElectron cryo-microscopy structure of the mechanotransduction channel NOMPC., Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y, Nature. 2017 Jul 6;547(7661):118-122. doi: 10.1038/nature22981. Epub 2017 Jun 26. PMID:28658211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (769 Kb) [Save to disk]
  • Biological Unit Coordinates (5vkq.pdb1.gz) 747 Kb
  • LPC: Ligand-Protein Contacts for 5VKQ
  • CSU: Contacts of Structural Units for 5VKQ
  • Retrieve 5VKQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VKQ from S2C, [Save to disk]
    • View 5VKQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VKQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vkq_C] [5vkq_B] [5vkq_D] [5vkq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VKQ
  • Community annotation for 5VKQ at PDBWiki (http://pdbwiki.org)

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