5VLM Transcription date Apr 25, 2017
title Crystal Structure Of Eilr In Complex With Crystal Violet
authors J.H.Pereira, T.L.Ruegg, J.Chen, P.Novichkov, A.Degiovani, G.P.Tom S.Singer, B.Simmons, M.Thelen, P.D.Adams
compound source
Molecule: Regulatory Protein Tetr
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Organism_scientific: Enterobacter Lignolyticus
Organism_taxid: 1334193
Gene: Entcl_2353
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.397 79.229 105.579 90.00 97.10 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand CVI enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (771 Kb) [Save to disk]
  • Biological Unit Coordinates (5vlm.pdb1.gz) 190 Kb
  • Biological Unit Coordinates (5vlm.pdb2.gz) 191 Kb
  • Biological Unit Coordinates (5vlm.pdb3.gz) 192 Kb
  • Biological Unit Coordinates (5vlm.pdb4.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 5VLM
  • CSU: Contacts of Structural Units for 5VLM
  • Structure Factors (546 Kb)
  • Retrieve 5VLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VLM from S2C, [Save to disk]
    • View 5VLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VLM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vlm_D] [5vlm_B] [5vlm_H] [5vlm_A] [5vlm_F] [5vlm_E] [5vlm_G] [5vlm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VLM
  • Community annotation for 5VLM at PDBWiki (http://pdbwiki.org)

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