5VSD	Transferase Transferase Inhibitor	date	May 11, 2017
title	Structure Of Human Glp Set-Domain (Ehmt1) In Complex With In
authors	N.Babault, Y.Xiong, J.Liu, J.Jin
compound		source
Molecule: Histone-Lysine N-Methyltransferase Ehmt1 Chain: A, B Fragment: Glp Catalytic Set-Domain Residues 1006-1266 Synonym: Euchromatic Histone-Lysine N-Methyltransferase 1,E G9a-Like Protein 1,Glp1,Histone H3-K9 Methyltransferase 5,H Hmtase 5,Lysine N-Methyltransferase 1d; Ec: 2.1.1.-,2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ehmt1, Euhmtase1, Glp, Kiaa1876, Kmt1d Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Codon Plus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Lic
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.864 96.594 102.478 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	9HJ, DIO, GOL, SAM, ZN	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-activity relationship studies of G9a-like protein (GLP) inhibitors., Xiong Y, Li F, Babault N, Wu H, Dong A, Zeng H, Chen X, Arrowsmith CH, Brown PJ, Liu J, Vedadi M, Jin J, Bioorg Med Chem. 2017 Aug 15;25(16):4414-4423. doi: 10.1016/j.bmc.2017.06.021., Epub 2017 Jun 19. PMID:28662962

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk] Biological Unit Coordinates (5vsd.pdb1.gz) 183 Kb LPC: Ligand-Protein Contacts for 5VSD CSU: Contacts of Structural Units for 5VSD Structure Factors (2905 Kb) Retrieve 5VSD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VSD from S2C, [Save to disk] Re-refined 5vsd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vsd_B] [5vsd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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