5VXX Protein Fibril date May 24, 2017
title Cryo-Em Reconstruction Of Neisseria Gonorrhoeae Type Iv Pilu
authors F.Wang, A.Orlova, T.Altindal, L.Craig, E.H.Egelman
compound source
Molecule: Fimbrial Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Type Iv Pilin, Ms11 Antigen, Pilin
Mutation: Yes
 Organism_scientific: Neisseria Gonorrhoeae
Organism_taxid: 485
Strain: C30
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.10 Å
ligand B6D, GLA, OPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceCryoelectron Microscopy Reconstructions of the Pseudomonas aeruginosa and Neisseria gonorrhoeae Type IV Pili at Sub-nanometer Resolution., Wang F, Coureuil M, Osinski T, Orlova A, Altindal T, Gesbert G, Nassif X, Egelman EH, Craig L, Structure. 2017 Sep 5;25(9):1423-1435.e4. doi: 10.1016/j.str.2017.07.016. PMID:28877506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (444 Kb) [Save to disk]
  • Biological Unit Coordinates (5vxx.pdb1.gz) 435 Kb
  • LPC: Ligand-Protein Contacts for 5VXX
  • CSU: Contacts of Structural Units for 5VXX
  • Retrieve 5VXX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VXX from S2C, [Save to disk]
    • View 5VXX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VXX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vxx_H] [5vxx_K] [5vxx_U] [5vxx_B] [5vxx_L] [5vxx_C] [5vxx_S] [5vxx_N] [5vxx_D] [5vxx_A] [5vxx_P] [5vxx_J] [5vxx_I] [5vxx_M] [5vxx_T] [5vxx_G] [5vxx_R] [5vxx_O] [5vxx_F] [5vxx_E] [5vxx_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VXX
  • Community annotation for 5VXX at PDBWiki (http://pdbwiki.org)

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