5W95 Hydrolase date Jun 22, 2017
title Mtb Rv3802c With Peg Bound
authors C.M.Goins, C.M.Schreidah, D.R.Ronning
compound source
Molecule: Conserved Membrane Protein Of Uncharacterised Fun
Chain: A, B
Synonym: Rv3802c
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Ers007672_01844, Ers023446_02759, Ers024213_00010, Ers024276_01951, Ers027644_01116, Ers027646_00777, Ers02765 Ers027659_00661, Ers027661_01209, Ers027666_00826, Ers03153 Ers124361_01515, Samea2683035_00004;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.188 91.300 101.391 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand 1PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for lipid binding and mechanism of the Mycobacterium tuberculosis Rv3802 phospholipase., Goins CM, Schreidah CM, Dajnowicz S, Ronning DR, J Biol Chem. 2017 Dec 15. pii: RA117.000240. doi: 10.1074/jbc.RA117.000240. PMID:29247008
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5w95.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (5w95.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5W95
  • CSU: Contacts of Structural Units for 5W95
  • Structure Factors (365 Kb)
  • Retrieve 5W95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W95 from S2C, [Save to disk]
  • View 5W95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w95_B] [5w95_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W95
  • Community annotation for 5W95 at PDBWiki (http://pdbwiki.org)

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