5WEO Transport Protein date Jul 10, 2017
title Activated Glua2 Complex Bound To Glutamate, Cyclothiazide, A Digitonin
authors E.C.Twomey, M.V.Yelshanskaya, R.A.Grassucci, J.Frank, A.I.Sobole
compound source
Molecule: Glutamate Receptor 2,Voltage-Dependent Calcium Ch Gamma-2 Subunit Chimera;
Chain: A, B, C, D
Fragment: Unp P19491 Residues 25-847, Unp O88602 2-208 Link Linker Gt;
Synonym: Glur-2,Ampa-Selective Glutamate Receptor 2,Glur-B, Glutamate Receptor Ionotropic,Ampa 2,Glua2,Neuronal Voltage Calcium Channel Gamma-2 Subunit,Stargazin,Transmembrane Amp Regulatory Protein Gamma-2,Tarp Gamma-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus, Mus Musculus
Organism_common: Rat, Mouse
Organism_taxid: 10116, 10090
Gene: Gria2, Glur2, Cacng2, Stg
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293 Gnti-
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
ligand CYZ, GLU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ion channel activity
  • extracellularly glutamate-ga...
  • ligand-gated ion channel act...
  • transmitter-gated ion channe...


  • Primary referenceChannel opening and gating mechanism in AMPA-subtype glutamate receptors., Twomey EC, Yelshanskaya MV, Grassucci RA, Frank J, Sobolevsky AI, Nature. 2017 Jul 24. doi: 10.1038/nature23479. PMID:28737760
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (570 Kb) [Save to disk]
  • Biological Unit Coordinates (5weo.pdb1.gz) 564 Kb
  • LPC: Ligand-Protein Contacts for 5WEO
  • CSU: Contacts of Structural Units for 5WEO
  • Retrieve 5WEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WEO from S2C, [Save to disk]
  • View 5WEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WEO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5weo_C] [5weo_D] [5weo_A] [5weo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WEO
  • Community annotation for 5WEO at PDBWiki (http://pdbwiki.org)

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