5WQ7
Protein Transport
date
Nov 23, 2016
title
Cryoem Structure Of Type II Secretion System Secretin Gspd I K12
authors
Z.Yan, M.Yin, X.Li
compound
source
Molecule
: Putative Type II Secretion System Protein D
Chain
: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Synonym
: T2ss Secretin Gspd
Engineered
: Yes
Organism_scientific
: Escherichia Coli K-12
Organism_taxid
: 83333
Strain
: K-12
Gene
: Gspd, Yhef, B3325, Jw5707
Expression_system
: Escherichia Coli K-12
Expression_system_taxid
: 83333
symmetry
Space Group
: P 1
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
1.000
1.000
1.000
90.00
90.00
90.00
method
Electron Microscopy
resolution
3.04 Å
Gene
Ontology
Chain
Function
Process
Component
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1074 Kb)
[Save to disk]
Biological Unit Coordinates
(5wq7.pdb1.gz) 1063 Kb
CSU:
Contacts of Structural Units
for 5WQ7
Retrieve 5WQ7 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5WQ7
from
S2C
,
[Save to disk]
View 5WQ7 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5WQ7
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5wq7_H]
[5wq7_I]
[5wq7_N]
[5wq7_M]
[5wq7_F]
[5wq7_K]
[5wq7_J]
[5wq7_C]
[5wq7_D]
[5wq7_O]
[5wq7]
[5wq7_G]
[5wq7_E]
[5wq7_B]
[5wq7_L]
[5wq7_A]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Other resources with information on 5WQ7
Community annotation for
5WQ7
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
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