5X41 Transport Protein date Feb 09, 2017
title 3.5a Resolution Structure Of A Cobalt Energy-Coupling Factor Transporter Using Lcp Method-Cbimqo
authors Z.Bao, X.Qi, W.Zhao, D.Li, P.Zhang
compound source
Molecule: Cobalt Abc Transporter Atp-Binding Protein
Chain: A, B, C, D
Synonym: Cbio
Engineered: Yes
Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cobalt Transport Protein Cbim
Chain: M, E
Synonym: Energy-Coupling Factor Transporter Probable Substr Capture Protein Cbim,Ecf Transporter S Component Cbim;
Engineered: Yes

Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Gene: Cbim
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Uncharacterized Protein Cbiq
Chain: Q, F
Engineered: Yes

Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.299 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.159 135.040 204.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.47 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


F, Q


M, E


Primary referenceStructure and mechanism of a group-I cobalt energy coupling factor transporter., Bao Z, Qi X, Hong S, Xu K, He F, Zhang M, Chen J, Chao D, Zhao W, Li D, Wang J, Zhang P, Cell Res. 2017 Mar 21. doi: 10.1038/cr.2017.38. PMID:28322252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (594 Kb) [Save to disk]
  • Biological Unit Coordinates (5x41.pdb1.gz) 295 Kb
  • Biological Unit Coordinates (5x41.pdb2.gz) 296 Kb
  • CSU: Contacts of Structural Units for 5X41
  • Structure Factors (961 Kb)
  • Retrieve 5X41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X41 from S2C, [Save to disk]
  • Re-refined 5x41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5X41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X41
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x41] [5x41_C] [5x41_D] [5x41_F] [5x41_M] [5x41_B] [5x41_A] [5x41_Q] [5x41_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X41
  • Community annotation for 5X41 at PDBWiki (http://pdbwiki.org)

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