5X7Z Transcription date Feb 28, 2017
title Crystal Structure Of Mycobacterium Tuberculosis Marr Family Rv2887 Complex With P-Aminosalicylic Acid
authors Y.R.Gao, D.F.Li, D.C.Wang, L.J.Bi
compound source
Molecule: Uncharacterized Hth-Type Transcriptional Regulato
Chain: A
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis H37rv
Organism_taxid: 83332
Strain: H37rv
Gene: Rv2887, Mtcy274.18
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.810 86.870 43.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand BHA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis., Gao YR, Li DF, Fleming J, Zhou YF, Liu Y, Deng JY, Zhou L, Zhou J, Zhu GF, Zhang XE, Wang DC, Bi LJ, Sci Rep. 2017 Jul 25;7(1):6471. doi: 10.1038/s41598-017-01705-4. PMID:28743871
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5x7z.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5X7Z
  • CSU: Contacts of Structural Units for 5X7Z
  • Structure Factors (84 Kb)
  • Retrieve 5X7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X7Z from S2C, [Save to disk]
  • View 5X7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X7Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X7Z
  • Community annotation for 5X7Z at PDBWiki (http://pdbwiki.org)

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