5XDJ Antimicrobial Protein date Mar 28, 2017
title Esculentin-1a(1-21)Nh2
authors A.Ghosh, A.Bhunia
compound source
Molecule: Esculentin-1a
Chain: A
Fragment: Unp Residues 1-21
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Organism_scientific: Pelophylax Esculentus
Organism_common: Edible Frog
Organism_taxid: 8401
methodSolution NMR
Primary referenceMembrane perturbing activities and structural properties of the frog-skin derived peptide Esculentin-1a(1-21)NH2 and its Diastereomer Esc(1-21)-1c: Correlation with their antipseudomonal and cytotoxic activity., Loffredo MR, Ghosh A, Harmouche N, Casciaro B, Luca V, Bortolotti A, Cappiello F, Stella L, Bhunia A, Bechinger B, Mangoni ML, Biochim Biophys Acta. 2017 Sep 12;1859(12):2327-2339. doi:, 10.1016/j.bbamem.2017.09.009. PMID:28912103
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5xdj.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 5XDJ
  • Original NMR restraints for 5XDJ from PDB
  • Retrieve 5XDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XDJ from S2C, [Save to disk]
    • View 5XDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XDJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xdj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XDJ
  • Community annotation for 5XDJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science