5XMJ	Electron Transport	date	May 15, 2017
title	Crystal Structure Of Quinol:Fumarate Reductase From Desulfov Gigas
authors	H.H.Guan, Y.C.Hsieh, P.R.Lin, C.J.Chen
compound		source
Molecule: Fumarate Reductase Flavoprotein Subunit Chain: A, E, I, M Synonym: Fad-Binding Protein		Organism_scientific: Desulfovibrio Gigas Organism_taxid: 879
Molecule: Succinate Dehydrogenase Iron-Sulfur Subunit Chain: B, F, J, N Ec: 1.3.5.1		Organism_scientific: Desulfovibrio Gigas Dsm 1382 = Atcc 19 Organism_taxid: 1121448
Molecule: Fumarate Reductase Respiratory Complex Chain: C, G, K, O Synonym: Membrane-Embedded Protein		Organism_scientific: Desulfovibrio Gigas Organism_taxid: 879
symmetry	Space Group: P 1 21 1	R_factor 0.232 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.136 131.772 195.428 90.00 94.22 90.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand	F3S, FAD, FES, FUM, HEM, LMT, MQ7, SF4	enzyme	Oxidoreductase E.C.1.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, E, M, I F, J, N, B electron transfer activity O, K, C, G
Primary reference	Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas., Guan HH, Hsieh YC, Lin PJ, Huang YC, Yoshimura M, Chen LY, Chen SK, Chuankhayan P, Lin CC, Chen NC, Nakagawa A, Chan SI, Chen CJ, Sci Rep. 2018 Oct 8;8(1):14935. doi: 10.1038/s41598-018-33193-5. PMID:30297797

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk] Biological Unit Coordinates (5xmj.pdb1.gz) 350 Kb Biological Unit Coordinates (5xmj.pdb2.gz) 346 Kb LPC: Ligand-Protein Contacts for 5XMJ CSU: Contacts of Structural Units for 5XMJ Structure Factors (2108 Kb) Retrieve 5XMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XMJ from S2C, [Save to disk]

View 5XMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XMJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xmj_G] [5xmj_J] [5xmj_C] [5xmj_K] [5xmj_E] [5xmj_I] [5xmj_F] [5xmj_M] [5xmj_A] [5xmj_O] [5xmj_B] [5xmj_N] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XMJ

Community annotation for 5XMJ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---