5XPD Transport Protein date Jun 01, 2017
title Sugar Transporter Of Atsweet13 In Inward-Facing State With A Analog
authors L.Han, X.J.Zhang
compound source
Molecule: Sugar Transporter
Chain: A
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.247 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.780 42.831 116.553 90.00 93.85 90.00
method X-Ray Diffractionresolution 2.79 Å
ligand DCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular mechanism of substrate recognition and transport by the AtSWEET13 sugar transporter., Han L, Zhu Y, Liu M, Zhou Y, Lu G, Lan L, Wang X, Zhao Y, Zhang XC, Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10089-10094. doi:, 10.1073/pnas.1709241114. Epub 2017 Sep 6. PMID:28878024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5xpd.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 5XPD
  • CSU: Contacts of Structural Units for 5XPD
  • Structure Factors (46 Kb)
  • Retrieve 5XPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XPD from S2C, [Save to disk]
    • View 5XPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XPD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xpd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XPD
  • Community annotation for 5XPD at PDBWiki (http://pdbwiki.org)

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