5YQI	Transport Protein	date	Nov 06, 2017
title	Crystal Structure Of The First Starkin Domain Of Lam2
authors	J.Tong, Y.J.Im
compound		source
Molecule: Membrane-Anchored Lipid-Binding Protein Ysp2 Chain: A Synonym: Lipid Transfer At Contact Site Protein 4,Lipid Tra Protein Anchored At Membrane Contact Sites 3,Yeast Suicide Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis2-Thr
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.433 59.505 84.290 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
Primary reference	Structural basis of sterol recognition and nonvesicular transport by lipid transfer proteins anchored at membrane contact sites., Tong J, Manik MK, Im YJ, Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1719709115. doi:, 10.1073/pnas.1719709115. PMID:29339490

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (5yqi.pdb1.gz) 29 Kb CSU: Contacts of Structural Units for 5YQI Structure Factors (177 Kb) Retrieve 5YQI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YQI from S2C, [Save to disk]

View 5YQI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YQI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yqi_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5YQI at PDBWiki (http://pdbwiki.org)

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