5YQZ Signaling Protein Hydrolase date Nov 08, 2017
title Structure Of The Glucagon Receptor In Complex With A Glucago
authors H.Zhang, A.Qiao, L.Yang, N.Van Eps, K.Frederiksen, D.Yang, A.Dai, X H.Zhang, C.Yi, C.Can, L.He, H.Yang, J.Lau, O.Ernst, M.Hanson, R.Ste M.Wang, S.Seedtz-Runge, H.Jiang, Q.Zhao, B.Wu
compound source
Molecule: Glucagon Receptor,Endolysin,Glucagon Receptor
Chain: R
Synonym: Gl-R,Lysis Protein,Lysozyme,Muramidase
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human, Bacteriophage T4
Organism_taxid: 9606, 10665
Gene: Gcgr, E, T4tp126
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Glucagon Analogue
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.120 108.790 216.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand NAG, OLC, PO4 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
P


R


Primary referenceStructure of the glucagon receptor in complex with a glucagon analogue., Zhang H, Qiao A, Yang L, Van Eps N, Frederiksen KS, Yang D, Dai A, Cai X, Zhang H, Yi C, Cao C, He L, Yang H, Lau J, Ernst OP, Hanson MA, Stevens RC, Wang MW, Reedtz-Runge S, Jiang H, Zhao Q, Wu B, Nature. 2018 Jan 3;553(7686):106-110. doi: 10.1038/nature25153. PMID:29300013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5yqz.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5YQZ
  • CSU: Contacts of Structural Units for 5YQZ
  • Structure Factors (299 Kb)
  • Retrieve 5YQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YQZ from S2C, [Save to disk]
  • View 5YQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YQZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yqz_R] [5yqz_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YQZ
  • Community annotation for 5YQZ at PDBWiki (http://pdbwiki.org)

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