5ZGB Photosynthesis date Mar 08, 2018
title Cryo-Em Structure Of The Red Algal Psi-Lhcr
authors X.Pi
compound source
Molecule: Psaa
Chain: A
Synonym: Psi-A,Psaa
Ec: 1.97.1.12
 Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psab
Chain: B
Synonym: Psi-B,Psab
Ec: 1.97.1.12
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psac
Chain: C
Synonym: Psi-C,Psac
Ec: 1.97.1.12
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psad
Chain: D
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psae
Chain: E
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psaf
Chain: F
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psai
Chain: I
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psaj
Chain: J
Synonym: Psi-J
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psak
Chain: K
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psal
Chain: L
Synonym: Psi Subunit V,Psi-L
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psam
Chain: M
Synonym: Psi-M
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Psao
Chain: O
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Lhcr1
Chain: 1, 4
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Lhcr2
Chain: 2, 5
Organism_scientific: Cyanidioschyzon Merolae (Strain 10d)
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d

Molecule: Lhcr3
Chain: 3
Organism_scientific: Cyanidioschyzon Merolae Strain 10d
Organism_common: Red Alga
Organism_taxid: 280699
Strain: 10d
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.63 Å
ligand 1DO, 3XQ, BCR, BGC, CL0, CLA, DGD, LHG, PQN, SF4, ZEX enzyme Oxidoreductase E.C.1.97.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 4


2, 5


A
  • electron transfer activity


    • B
  • electron transfer activity


    • C


    D


    E


    F


    I


    J


    K


    L


    M


    O


    Primary referenceUnique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga., Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR, Proc Natl Acad Sci U S A. 2018 Apr 9. pii: 1722482115. doi:, 10.1073/pnas.1722482115. PMID:29632169
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (684 Kb) [Save to disk]
  • Biological Unit Coordinates (5zgb.pdb1.gz) 605 Kb
  • LPC: Ligand-Protein Contacts for 5ZGB
  • CSU: Contacts of Structural Units for 5ZGB
  • Retrieve 5ZGB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZGB from S2C, [Save to disk]
    • View 5ZGB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZGB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zgb_4] [5zgb_B] [5zgb_I] [5zgb_E] [5zgb_3] [5zgb_2] [5zgb_D] [5zgb_M] [5zgb_5] [5zgb_O] [5zgb_C] [5zgb_F] [5zgb_A] [5zgb_1] [5zgb_K] [5zgb_L] [5zgb_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZGB
  • Community annotation for 5ZGB at PDBWiki (http://pdbwiki.org)

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