6AX4 Protein Binding date Sep 06, 2017
title Plk-1 Polo-Box Domain In Complex With Histidine N(Tau)-Cycli Macrocycle 5b.
authors R.A.Grant, D.Hymel, M.B.Yaffe, T.R.Burke
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A
Fragment: Unp Residues 367-603
Synonym: Polo-Like Kinase 1,Plk-1,Serinethreonine-Protein Stpk13;
Ec: 2.7.11.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk1, Plk
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histidine N(Tau)-Cyclized Macrocycle 5b
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.132 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.449 51.294 58.034 90.00 100.84 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand 56A, AML, N7P, TPO enzyme Transferase E.C.2.7.11.21 BRENDA
Primary referenceHistidine N(tau)-cyclized macrocycles as a new genre of polo-like kinase 1 polo-box domain-binding inhibitors., Hymel D, Grant RA, Tsuji K, Yaffe MB, Burke TR Jr, Bioorg Med Chem Lett. 2018 Aug 19. pii: S0960-894X(18)30692-9. doi:, 10.1016/j.bmcl.2018.08.018. PMID:30174151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (6ax4.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6AX4
  • CSU: Contacts of Structural Units for 6AX4
  • Structure Factors (234 Kb)
  • Retrieve 6AX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AX4 from S2C, [Save to disk]
  • View 6AX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ax4_C] [6ax4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AX4
  • Community annotation for 6AX4 at PDBWiki (http://pdbwiki.org)

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