6BBJ Metal Transport date Oct 18, 2017
title Xenopus Tropicalis Trpv4
authors Z.Deng, R.K.Hite, P.Yuan
compound source
Molecule: Transient Receptor Potential Cation Channel, Subf Member 4;
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Xenopus Tropicalis
Organism_common: Western Clawed Frog
Organism_taxid: 8364
Gene: Trpv4
Expression_system: Pichia
Expression_system_taxid: 4919
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCryo-EM and X-ray structures of TRPV4 reveal insight into ion permeation and gating mechanisms., Deng Z, Paknejad N, Maksaev G, Sala-Rabanal M, Nichols CG, Hite RK, Yuan P, Nat Struct Mol Biol. 2018 Mar;25(3):252-260. doi: 10.1038/s41594-018-0037-5. Epub, 2018 Feb 26. PMID:29483651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (350 Kb) [Save to disk]
  • Biological Unit Coordinates (6bbj.pdb1.gz) 343 Kb
  • CSU: Contacts of Structural Units for 6BBJ
  • Retrieve 6BBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BBJ from S2C, [Save to disk]
    • View 6BBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bbj_D] [6bbj_A] [6bbj_B] [6bbj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BBJ
  • Community annotation for 6BBJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science