6DMJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	53W	enzyme
Primary reference	qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps., van Zundert G, Hudson BM, de Oliveira S, Keedy DA, Fonseca R, Heliou A, Suresh P, Borrelli K, Day T, Fraser J, van den Bedem H, J Med Chem. 2018 Nov 20. doi: 10.1021/acs.jmedchem.8b01292. PMID:30457858

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (6dmj.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 6DMJ CSU: Contacts of Structural Units for 6DMJ Structure Factors (1721 Kb) Retrieve 6DMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DMJ from S2C, [Save to disk]

View 6DMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DMJ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6dmj from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dmj_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DMJ

Community annotation for 6DMJ at PDBWiki (http://pdbwiki.org)

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