6DNF Membrane Protein date Jun 06, 2018
title Cryo-Em Structure Of The Mitochondrial Calcium Uniporter Mcu Fungus Cyphellophora Europaea
authors S.B.Long, R.Baradaran, C.Wang
compound source
Molecule: Mitochondrial Calcium Uniporter Mcu
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Cyphellophora Europaea Cbs 101466
Organism_taxid: 1220924
Gene: Hmpref1541_00236
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand CA, DGG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCryo-EM structures of fungal and metazoan mitochondrial calcium uniporters., Baradaran R, Wang C, Siliciano AF, Long SB, Nature. 2018 Jul 11. pii: 10.1038/s41586-018-0331-8. doi:, 10.1038/s41586-018-0331-8. PMID:29995857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (6dnf.pdb1.gz) 245 Kb
  • LPC: Ligand-Protein Contacts for 6DNF
  • CSU: Contacts of Structural Units for 6DNF
  • Retrieve 6DNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DNF from S2C, [Save to disk]
    • View 6DNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DNF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dnf_C] [6dnf_A] [6dnf_D] [6dnf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DNF
  • Community annotation for 6DNF at PDBWiki (http://pdbwiki.org)

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