6HJN Viral Protein date Sep 04, 2018
title Structure Of Influenza Hemagglutinin Ectodomain (Aduckalbe
authors D.J.Benton, P.B.Rosenthal
compound source
Molecule: Hemagglutinin
Chain: A, C, E
 Organism_scientific: Influenza A Virus (Strain Aduckalberta351976 H1n1);
Organism_taxid: 352520

Molecule: Hemagglutinin
Chain: B, D, F
Organism_scientific: Influenza A Virus (Strain Aduckalberta351976 H1n1);
Organism_taxid: 352520
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand BMA, FUC, MAN, NAG, UPL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceInfluenza hemagglutinin membrane anchor., Benton DJ, Nans A, Calder LJ, Turner J, Neu U, Lin YP, Ketelaars E, Kallewaard NL, Corti D, Lanzavecchia A, Gamblin SJ, Rosenthal PB, Skehel JJ, Proc Natl Acad Sci U S A. 2018 Sep 17. pii: 1810927115. doi:, 10.1073/pnas.1810927115. PMID:30224494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (6hjn.pdb1.gz) 245 Kb
  • LPC: Ligand-Protein Contacts for 6HJN
  • CSU: Contacts of Structural Units for 6HJN
  • Retrieve 6HJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HJN from S2C, [Save to disk]
    • View 6HJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6HJN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hjn_B] [6hjn_E] [6hjn_A] [6hjn_D] [6hjn_F] [6hjn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6HJN
  • Community annotation for 6HJN at PDBWiki (http://pdbwiki.org)

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