OCA Atlas for 6MYP

6MYP

Oxidoreductase Oxidoreductase Inhibitor

date

Nov 02, 2018

title

Avian Mitochondrial Complex II With Ttfa (Thenoyltrifluoroac Bound

authors

E.A.Berry, L.S.Huang

compound

source

Molecule: Succinate Dehydrogenase [Ubiquinone] Flavoprotein Mitochondrial;
Chain: A
Ec: 1.3.5.1

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart

Molecule: Succinate Dehydrogenase [Ubiquinone] Iron-Sulfur Mitochondrial;
Chain: B
Synonym: Iron-Sulfur Subunit Of Complex II,Ip
Ec: 1.3.5.1

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart

Molecule: Succinate Dehydrogenase Cytochrome B, Large Subun
Chain: C
Ec: 1.3.5.1

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart

Molecule: Succinate Dehydrogenase [Ubiquinone] Cytochrome B Subunit, Mitochondrial;
Chain: D
Synonym: Cybs,Succinate Dehydrogenase Complex Subunit D,Suc Ubiquinone Oxidoreductase Cytochrome B Small Subunit,Succin Ubiquinone Reductase Membrane Anchor Subunit

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart

symmetry

Space Group: P 21 21 21

R_factor

0.235

R_Free

0.259

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
69.951	84.303	290.194	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.10 Å

ligand

3PE, BCT, F3S, FAD, FES, HEM, K, MG, MLZ, OAA, PEG, SF4, TTF, UMQ, UNL

enzyme

Oxidoreductase E.C.1.3.5.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A			mitochondrial respiratory ch...
B
C
D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]

Biological Unit Coordinates (6myp.pdb1.gz) 389 Kb

LPC: Ligand-Protein Contacts for 6MYP

CSU: Contacts of Structural Units for 6MYP

Structure Factors (3250 Kb)

Retrieve 6MYP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6MYP from S2C, [Save to disk]

View 6MYP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6MYP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6myp_D] [6myp_A] [6myp_B] [6myp_C]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6MYP

Community annotation for 6MYP at PDBWiki (http://pdbwiki.org)

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