6RNT Hydrolase(Endoribonuclease) date Aug 20, 1991
title Crystal Structure Of Ribonuclease T1 Complexed With Adenosin Monophosphate At 1.8-Angstroms Resolution
authors J.Ding, G.Koellner, H.P.Grunert, W.Saenger
compound source
Molecule: Ribonuclease T1
Chain: A
Ec: 3.1.27.3
Engineered: Yes
 Organism_scientific: Aspergillus Oryzae
Organism_taxid: 5062
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.930 46.570 41.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2AM, CA enzyme Hydrolase E.C.3.1.27.3 BRENDA
related structures by homologous chain: 1RN4, 2RNT
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity
  • ribonuclease activity


    • Primary referenceCrystal structure of ribonuclease T1 complexed with adenosine 2'-monophosphate at 1.8-A resolution., Ding J, Koellner G, Grunert HP, Saenger W, J Biol Chem 1991 Aug 15;266(23):15128-34. PMID:1651320
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (6rnt.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 6RNT
  • CSU: Contacts of Structural Units for 6RNT
  • Likely Quarternary Molecular Structure file(s) for 6RNT
  • Retrieve 6RNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RNT from S2C, [Save to disk]
    • View 6RNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RNT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 6RNT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d6rnt__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rnt] [6rnt_A]
  • SWISS-PROT database: [P00651]
  • Domain organization of [RNT1_ASPOR] by SWISSPFAM
    • Other resources with information on 6RNT
  • Community annotation for 6RNT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science