6WBL Transport Protein date Mar 26, 2020
title Cryo-Em Structure Of Human Pannexin 1 Channel With Deletion Terminal Helix And C-Terminal Tail, In Complex With Cbx
authors W.Lu, J.Du, Z.Ruan
compound source
Molecule: Pannexin-1
Chain: A, B, C, D, E, F, G
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Panx1, Mrs1, Unq2529pro6028
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.13 Å
ligand CBO enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceStructures of human pannexin 1 reveal ion pathways and mechanism of gating., Ruan Z, Orozco IJ, Du J, Lu W, Nature. 2020 Jun 3. pii: 10.1038/s41586-020-2357-y. doi:, 10.1038/s41586-020-2357-y. PMID:32494015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (6wbl.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 6WBL
  • CSU: Contacts of Structural Units for 6WBL
  • Retrieve 6WBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WBL from S2C, [Save to disk]
    • View 6WBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WBL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wbl_E] [6wbl_A] [6wbl_C] [6wbl_D] [6wbl_F] [6wbl_B] [6wbl_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WBL
  • Community annotation for 6WBL at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science