7AZ5 Dna Binding Protein date Nov 16, 2020
title Dna Polymerase Sliding Clamp From Escherichia Coli With Pept Bound
authors C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, V.Olier P.Wolff, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Gu D.Y.Burnouf
compound source
Molecule: Beta Sliding Clamp
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Escherichia Coli 2-427-07_s4_c3
Organism_taxid: 1444266
Gene: Dnan, Ad31_4438
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide 47
Chain: H, I, J, K
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.886 80.166 83.371 62.79 71.29 81.66
method X-Ray Diffractionresolution 1.87 Å
ligand ACE, ALC, OIC, PEG, PG4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (501 Kb) [Save to disk]
  • Biological Unit Coordinates (7az5.pdb1.gz) 249 Kb
  • Biological Unit Coordinates (7az5.pdb2.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 7AZ5
  • CSU: Contacts of Structural Units for 7AZ5
  • Structure Factors (872 Kb)
  • Retrieve 7AZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7AZ5 from S2C, [Save to disk]
    • View 7AZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7AZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7az5_K] [7az5_H] [7az5_A] [7az5_C] [7az5_B] [7az5_D] [7az5_J] [7az5_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7AZ5
  • Community annotation for 7AZ5 at PDBWiki (http://pdbwiki.org)

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