7D56 Hydrolase date Sep 25, 2020
title Structure Of The Peptidylarginine Deiminase Type III (Pad3) With Cl-Amidine
authors K.Funabashi, M.Unno
compound source
Molecule: Protein-Arginine Deiminase Type-3
Chain: C, B, A
Synonym: Peptidylarginine Deiminase III,Protein-Arginine De Type III;
Ec: 3.5.3.15
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Padi3, Pad3, Pdi3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.242 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
199.577 115.343 127.844 90.00 121.38 90.00
method X-Ray Diffractionresolution 3.18 Å
ligand BFB, CA, CL, EDO, GOL enzyme Hydrolase E.C.3.5.3.15 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (633 Kb) [Save to disk]
  • Biological Unit Coordinates (7d56.pdb1.gz) 419 Kb
  • Biological Unit Coordinates (7d56.pdb2.gz) 419 Kb
  • LPC: Ligand-Protein Contacts for 7D56
  • CSU: Contacts of Structural Units for 7D56
  • Structure Factors (506 Kb)
  • Retrieve 7D56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D56 from S2C, [Save to disk]
    • View 7D56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7D56
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d56_B] [7d56_A] [7d56_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7D56
  • Community annotation for 7D56 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science