7OLI Hydrolase date May 20, 2021
title Crystal Structure Of Pab-Agog In Complex With 8-Oxoguanosine
authors F.Coste, S.Goffinont, D.Flament, B.Castaing
compound source
Molecule: N-Glycosylasedna Lyase
Chain: A, B
Synonym: 8-Oxoguanine Dna Glycosylase,Agog,Dna-(Apurinic Or Apyrimidinic Site) Lyase,Ap Lyase;
Ec: 3.2.2.-,4.2.99.18
Engineered: Yes
 Organism_scientific: Pyrococcus Abyssi (Strain Ge5 Orsay)
Organism_taxid: 272844
Gene: Pyrab10170, Pab1695
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.161 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.063 47.202 91.271 90.00 100.80 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 8HG, EDO enzyme Hydrolase E.C.3.2.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (7oli.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (7oli.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 7OLI
  • CSU: Contacts of Structural Units for 7OLI
  • Structure Factors (1819 Kb)
  • Retrieve 7OLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7OLI from S2C, [Save to disk]
    • View 7OLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7OLI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7oli_B] [7oli_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7OLI
  • Community annotation for 7OLI at PDBWiki (http://pdbwiki.org)

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