7Z4S Unknown Function date Mar 04, 2022
title Crystal Structure Of Sars-Cov-2 Mpro In Complex With Cyclic Gm4 Including Unnatural Amino Acids.
authors C.D.Owen, T.Miura, T.Malla, L.Lukacik, C.M.Strain-Damerell, A.Tum L.Brewitz, M.A.Mcdonough, E.Salah, N.Terasaka, T.Katoh, A.Kawamu C.J.Schofield, H.Suga, M.A.Walsh
compound source
Molecule: 3c-Like Proteinase Nsp5
Chain: A, B
Synonym: 3cl-Pro,3clp,Main Protease,Mpro,Non-Structural Pro Nsp5,Sars Coronavirus Main Proteinase;
Ec: 3.4.22.69
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_taxid: 2697049
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Macrocyclic Peptide Inhibitor
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.515 56.112 63.238 113.87 110.53 90.92
method X-Ray Diffractionresolution 1.70 Å
ligand ACE, AEA, CSO, DMS, DTY, EDO, II7, NH2, PEG, PGE enzyme Hydrolase E.C.3.4.22.69 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (7z4s.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 7Z4S
  • CSU: Contacts of Structural Units for 7Z4S
  • Structure Factors (1196 Kb)
  • Retrieve 7Z4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7Z4S from S2C, [Save to disk]
    • View 7Z4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7Z4S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7z4s_D] [7z4s_B] [7z4s_A] [7z4s_C] [7z4s_X] [7z4s_Y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7Z4S
  • Community annotation for 7Z4S at PDBWiki (http://pdbwiki.org)

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