OCA Atlas for 8I34

8I34

Lipid Binding Protein

date

Jan 16, 2023

title

The Crystal Structure Of Epd-Bcp1 From A Marine Sponge

authors

Y.Shomura, S.Kawasaki

compound

source

Molecule: Alpha Subunit Of Epd-Bcp1
Chain: A, C, E, G

Organism_scientific: Haliclona Sp.
Organism_taxid: 34490

Molecule: Beta Subunit Of Epd-Bcp1
Chain: B, D, F, H

Organism_scientific: Haliclona Sp.
Organism_taxid: 34490

symmetry

Space Group: P 1 21 1

R_factor

0.202

R_Free

0.248

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
73.749	101.380	112.588	90.00	95.06	90.00

method

X-Ray Diffraction

resolution

2.44 Å

ligand

AXT, NAG, O1U

enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]

Biological Unit Coordinates (8i34.pdb1.gz) 61 Kb

Biological Unit Coordinates (8i34.pdb2.gz) 61 Kb

Biological Unit Coordinates (8i34.pdb3.gz) 61 Kb

Biological Unit Coordinates (8i34.pdb4.gz) 61 Kb

LPC: Ligand-Protein Contacts for 8I34

CSU: Contacts of Structural Units for 8I34

Structure Factors (1771 Kb)

Retrieve 8I34 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 8I34 from S2C, [Save to disk]

View 8I34 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 8I34

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [8i34_C] [8i34_E] [8i34_G] [8i34_H] [8i34_B] [8i34_D] [8i34_A] [8i34_F]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 8I34

Community annotation for 8I34 at PDBWiki (http://pdbwiki.org)

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