8SV4 Dna Binding Protein Dna date May 15, 2023
title 7-Deazapurines And 5-Halogenpyrimidine Dna Duplex
authors P.S.Pallan, M.Egli
compound source
Molecule: Ribonuclease H
Chain: A
Synonym: Rnase H
Ec: 3.1.26.4
Engineered: Yes
Mutation: Yes
 Organism_scientific: Halalkalibacterium Halodurans
Organism_taxid: 86665
Gene: Rnha
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D((B86)P(7dd)P(B86)P(7dd)P(7da)P(7d P(Ucl)P(B86)P(7dd)P(B86)P(7dd))-3');
Chain: B, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 62
R_factor 0.214 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.539 92.539 78.896 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand 7DA, 7GU, ACT, B86, C37, EDO, FWN, SO4, UCL enzyme Hydrolase E.C.3.1.26.4 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (8sv4.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 8SV4
  • CSU: Contacts of Structural Units for 8SV4
  • Structure Factors (218 Kb)
  • Retrieve 8SV4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8SV4 from S2C, [Save to disk]
    • View 8SV4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 8SV4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8sv4_A] [8sv4_B] [8sv4_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 8SV4
  • Community annotation for 8SV4 at PDBWiki (http://pdbwiki.org)

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